Computational Chemistry
Chemical structure from journal publication

GTR-CoT: Graph Traversal Chain-of-Thought for Molecules

GTR-CoT uses graph traversal chain-of-thought reasoning to improve optical chemical structure recognition accuracy.

Computational Chemistry
Optical chemical structure recognition example

MolRec: Chemical Structure Recognition at CLEF 2012

MolRec achieves 95%+ accuracy on simple structures but struggles with complex diagrams, revealing rule-based OCSR limits …

Computational Chemistry
Optical chemical structure recognition example

MolRec: Performance Analysis at TREC 2011 Chemical Track

MolRec achieves 95% accuracy on 1000 molecular diagrams at TREC 2011 with detailed OCR and structure reconstruction.

Computational Chemistry
Markush structure diagram

SubGrapher: Visual Fingerprinting of Chemical Structures

Novel OCSR method creating molecular fingerprints from images through functional group segmentation for database …

Computational Chemistry
Chemical structure diagram for optical recognition

αExtractor: Chemical Info from Biomedical Literature

αExtractor uses ResNet-Transformer to extract chemical structures from literature images, including noisy and hand-drawn …

Computational Chemistry
Chemical structure from journal publication

ChemInfty: Chemical Structure Recognition in Patent Images

Fujiyoshi et al.'s segment-based approach for recognizing chemical structures in challenging Japanese patent images with …

Computational Chemistry
Optical chemical structure recognition example

Img2Mol: Accurate SMILES from Molecular Depictions

Two-stage CNN approach for converting molecular images to SMILES using CDDD embeddings and extensive data augmentation.

Computational Chemistry
Markush structure diagram

MolNexTR: Generalized Deep Learning for Molecular Images

Chen et al.'s dual-stream encoder approach for robust molecular structure recognition from diverse real-world images …

Computational Chemistry
Chemical structure diagram for optical recognition

OSRA: Optical Structure Recognition for Chemistry

Filippov & Nicklaus's open-source rule-based system for converting molecular structure images into machine-readable …

Computational Chemistry
A colored molecule with annotations, representing the diverse drawing styles found in scientific papers that OCSR models must handle.

MolParser-7M & WildMol: Large-Scale OCSR Datasets

MolParser-7M is the largest OCSR dataset with 7.7M image-text pairs of molecules and E-SMILES, including 400k real-world …

Computational Chemistry
Optical chemical structure recognition example

MolParser: End-to-End Molecular Structure Recognition

MolParser converts molecular images from scientific documents to machine-readable formats using end-to-end learning.

Computational Chemistry
Optical chemical structure recognition example

IMG2SMI: Translating Molecular Structure Images to SMILES

Campos & Ji's method for converting 2D molecular images to SMILES strings using Transformers and SELFIES representation.